Variant report

Variant	rs12080424
Chromosome Location	chr1:211632285-211632286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12057528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12724746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58334334	1.00[EUR][1000 genomes]
rs58551885	1.00[EUR][1000 genomes]
rs60789444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6661875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071184	1.00[EUR][1000 genomes]
rs73072803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072817	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73076963	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211627800-211633200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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