The 2.0 version of rSNPBase

Variant report

Variant rs12082194
Chromosome Location chr1:85779911-85779912
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85774600-85780000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:85774600-85780000 Weak transcription Lung lung
3 chr1:85774600-85780000 Weak transcription Pancreas Pancrea
4 chr1:85774600-85780000 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:85774600-85780000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:85774600-85782400 Weak transcription Fetal Intestine Small intestine
7 chr1:85774600-85785200 Weak transcription Liver Liver
8 chr1:85774600-85785800 Weak transcription Fetal Intestine Large intestine
9 chr1:85774600-85787000 Weak transcription Fetal Stomach stomach
10 chr1:85774600-85794800 Weak transcription Spleen Spleen
11 chr1:85774800-85782200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:85774800-85782200 Weak transcription Duodenum Mucosa Duodenum
13 chr1:85774800-85784000 Weak transcription HepG2 liver
14 chr1:85774800-85790400 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr1:85774800-85790600 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr1:85775000-85781400 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:85777200-85781400 Weak transcription Brain Germinal Matrix brain
19 chr1:85777400-85781600 Enhancers Osteobl bone
20 chr1:85777400-85786400 Enhancers NHLF lung
21 chr1:85777600-85780000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:85777600-85782400 Enhancers HUVEC blood vessel
23 chr1:85777600-85784000 Enhancers NHDF-Ad bronchial
24 chr1:85777800-85782800 Enhancers Skeletal Muscle Female skeletal muscle
25 chr1:85778000-85780000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr1:85778000-85780800 Weak transcription Fetal Brain Female brain
27 chr1:85778200-85780000 Weak transcription Right Ventricle heart
28 chr1:85778200-85780400 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr1:85778200-85790400 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:85778400-85785600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:85778600-85782600 Enhancers HMEC breast
32 chr1:85778800-85781400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:85778800-85781600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:85778800-85781800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:85778800-85781800 Enhancers HSMMtube muscle
36 chr1:85778800-85782400 Enhancers NH-A brain
37 chr1:85778800-85786000 Enhancers NHEK skin
38 chr1:85778800-85788800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:85778800-85789600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:85779000-85780400 Enhancers Psoas Muscle Psoas
41 chr1:85779000-85780800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:85779000-85781200 Enhancers Hela-S3 cervix
43 chr1:85779000-85781600 Enhancers Fetal Heart heart
44 chr1:85779000-85781600 Enhancers HSMM muscle
45 chr1:85779000-85785600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:85779200-85780000 Weak transcription Left Ventricle heart
47 chr1:85779200-85780800 Enhancers Fetal Muscle Leg muscle
48 chr1:85779400-85780000 Enhancers Muscle Satellite Cultured Cells --
49 chr1:85779400-85780400 Enhancers Adipose Nuclei Adipose
50 chr1:85779400-85780400 Enhancers Aorta Aorta

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Last update: Aug 31, 2015