Variant report

Variant	rs12082200
Chromosome Location	chr1:210582417-210582418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210545333..210549114-chr1:210576030..210582834,11	K562	blood:
3	chr1:210573314..210577563-chr1:210578533..210582759,4	K562	blood:
4	chr1:210544032..210549009-chr1:210579509..210584636,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1033492	0.88[EUR][1000 genomes]
rs11119483	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12070523	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12085633	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12411194	0.91[ASN][1000 genomes]
rs17016068	0.94[ASN][1000 genomes]
rs4845012	0.96[ASN][1000 genomes]
rs56381238	0.86[ASN][1000 genomes]
rs72745442	0.94[ASN][1000 genomes]
rs72745456	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
7	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
8	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:210571400-210591400	Weak transcription	Ovary	ovary
10	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
13	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
14	chr1:210574000-210586600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:210574400-210587400	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
19	chr1:210575800-210584600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:210577400-210591600	Weak transcription	Thymus	Thymus
21	chr1:210578800-210584400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:210581000-210584800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:210581000-210585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:210581200-210585400	Weak transcription	HSMM	muscle
25	chr1:210581200-210586600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:210581200-210590000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:210581400-210582600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:210581400-210584200	Weak transcription	HSMMtube	muscle
30	chr1:210582000-210585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:210582200-210582800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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