Variant report

Variant	rs12084637
Chromosome Location	chr1:211344614-211344615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211344431..211346604-chr1:211431429..211433331,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11119665	1.00[EUR][1000 genomes]
rs11119700	1.00[EUR][1000 genomes]
rs11119701	1.00[EUR][1000 genomes]
rs11119703	1.00[EUR][1000 genomes]
rs11119704	1.00[EUR][1000 genomes]
rs12061710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067738	1.00[EUR][1000 genomes]
rs12067778	1.00[EUR][1000 genomes]
rs12068018	1.00[EUR][1000 genomes]
rs12069230	1.00[EUR][1000 genomes]
rs12070528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12071874	1.00[EUR][1000 genomes]
rs12073144	1.00[EUR][1000 genomes]
rs12076586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078498	1.00[EUR][1000 genomes]
rs12079263	1.00[EUR][1000 genomes]
rs12079934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086827	1.00[EUR][1000 genomes]
rs12089737	1.00[EUR][1000 genomes]
rs12089830	1.00[EUR][1000 genomes]
rs12089911	1.00[EUR][1000 genomes]
rs12096590	1.00[EUR][1000 genomes]
rs12724746	1.00[EUR][1000 genomes]
rs28523567	1.00[EUR][1000 genomes]
rs58263592	1.00[EUR][1000 genomes]
rs60471497	1.00[EUR][1000 genomes]
rs60789444	1.00[EUR][1000 genomes]
rs73071099	1.00[EUR][1000 genomes]
rs73072803	1.00[EUR][1000 genomes]
rs73072808	1.00[EUR][1000 genomes]
rs73072811	1.00[EUR][1000 genomes]
rs73072815	1.00[EUR][1000 genomes]
rs73073478	1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075431	1.00[EUR][1000 genomes]
rs73075455	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075496	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077469	1.00[EUR][1000 genomes]
rs73077471	1.00[EUR][1000 genomes]
rs74157510	1.00[EUR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945276	chr1:211341161-211348032	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211342800-211348800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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