Variant report

Variant	rs12084848
Chromosome Location	chr1:211152696-211152697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11119635	1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080732	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081478	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082952	0.85[LWK][hapmap];0.91[MKK][hapmap]
rs12087790	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017085	0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017087	0.85[LWK][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap]
rs1933520	1.00[ASN][1000 genomes]
rs2062674	0.81[LWK][hapmap];0.91[MKK][hapmap]
rs56919772	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57821233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58216144	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59431775	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671566	0.84[YRI][hapmap]
rs6671576	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531557	0.81[ASW][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556274	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524740	chr1:211143108-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
2	nsv524860	chr1:211152696-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152000-211152800	Enhancers	HSMMtube	muscle
2	chr1:211152400-211153200	Weak transcription	HSMM	muscle
3	chr1:211152400-211154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:211152600-211169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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