Variant report

Variant	rs12085765
Chromosome Location	chr1:195731969-195731970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195728899..195731213-chr1:195731741..195733671,2	K562	blood:
2	chr1:195720981..195722711-chr1:195730556..195732740,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218789	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10494730	0.94[ASN][1000 genomes]
rs10754148	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801446	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801447	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921893	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10921895	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10921896	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10921898	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921899	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921904	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10921908	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921913	0.93[ASN][1000 genomes]
rs11811129	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12029959	0.93[ASN][1000 genomes]
rs12034483	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12035482	0.93[ASN][1000 genomes]
rs12035852	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12073625	0.81[ASN][1000 genomes]
rs12073662	0.81[ASN][1000 genomes]
rs1576765	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2895786	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2942922	0.93[ASN][1000 genomes]
rs2989977	0.92[ASN][1000 genomes]
rs2989978	0.92[ASN][1000 genomes]
rs2989979	0.88[ASN][1000 genomes]
rs2989980	0.86[ASN][1000 genomes]
rs4010	0.94[ASN][1000 genomes]
rs66471251	0.81[ASN][1000 genomes]
rs6676223	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72734161	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72736142	0.81[ASN][1000 genomes]
rs965614	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9970789	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195730600-195732800	Weak transcription	Hela-S3	cervix

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