Variant report

Variant	rs12085802
Chromosome Location	chr1:168319966-168319967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12089215	0.82[EUR][1000 genomes]
rs59065645	0.82[EUR][1000 genomes]
rs61521307	0.90[EUR][1000 genomes]
rs6659763	0.90[EUR][1000 genomes]
rs72701770	0.90[EUR][1000 genomes]
rs72701772	0.90[EUR][1000 genomes]
rs72701777	0.90[EUR][1000 genomes]
rs72701779	0.81[EUR][1000 genomes]
rs72701780	0.81[EUR][1000 genomes]
rs72701781	0.81[EUR][1000 genomes]
rs72701783	0.81[EUR][1000 genomes]
rs72701784	0.81[EUR][1000 genomes]
rs7535315	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168318400-168323800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:168318400-168323800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:168318400-168324000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:168318400-168324200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:168318400-168324200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:168318400-168329200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:168318400-168329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:168318400-168329400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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