Variant report

Variant	rs12086144
Chromosome Location	chr1:195768576-195768577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195762140..195764635-chr1:195768082..195769673,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10218627	1.00[AMR][1000 genomes]
rs10494732	1.00[AMR][1000 genomes]
rs10921924	1.00[AMR][1000 genomes]
rs10921925	1.00[AMR][1000 genomes]
rs10921927	1.00[AMR][1000 genomes]
rs10921962	1.00[AMR][1000 genomes]
rs10921963	1.00[AMR][1000 genomes]
rs10921964	1.00[AMR][1000 genomes]
rs10921965	1.00[AMR][1000 genomes]
rs10921966	1.00[AMR][1000 genomes]
rs12057268	1.00[AMR][1000 genomes]
rs12064485	1.00[AMR][1000 genomes]
rs12064729	1.00[AMR][1000 genomes]
rs12075424	1.00[AMR][1000 genomes]
rs12086305	1.00[AMR][1000 genomes]
rs12091295	1.00[AMR][1000 genomes]
rs12091529	1.00[AMR][1000 genomes]
rs12091568	1.00[AMR][1000 genomes]
rs12094869	1.00[AMR][1000 genomes]
rs12095849	1.00[AMR][1000 genomes]
rs13374044	1.00[AMR][1000 genomes]
rs13374137	1.00[AMR][1000 genomes]
rs13375919	1.00[AMR][1000 genomes]
rs13376008	1.00[AMR][1000 genomes]
rs13376090	1.00[AMR][1000 genomes]
rs13376278	1.00[AMR][1000 genomes]
rs13376291	1.00[AMR][1000 genomes]
rs16838964	1.00[AMR][1000 genomes]
rs16838968	1.00[AMR][1000 genomes]
rs16838969	1.00[AMR][1000 genomes]
rs16838971	1.00[AMR][1000 genomes]
rs16838972	1.00[AMR][1000 genomes]
rs4276893	1.00[AMR][1000 genomes]
rs4540641	1.00[AMR][1000 genomes]
rs55654011	1.00[AMR][1000 genomes]
rs55917394	1.00[AMR][1000 genomes]
rs57214547	1.00[AMR][1000 genomes]
rs57468767	1.00[AMR][1000 genomes]
rs59149191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59797206	1.00[AMR][1000 genomes]
rs59985889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61046734	1.00[AMR][1000 genomes]
rs61310168	1.00[AMR][1000 genomes]
rs61512857	1.00[AMR][1000 genomes]
rs74132923	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132954	1.00[AMR][1000 genomes]
rs74133327	1.00[AMR][1000 genomes]
rs74133328	1.00[AMR][1000 genomes]
rs74133329	1.00[AMR][1000 genomes]
rs74133330	1.00[AMR][1000 genomes]
rs74133331	1.00[AMR][1000 genomes]
rs74133336	1.00[AMR][1000 genomes]
rs74133337	1.00[AMR][1000 genomes]
rs7527210	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540814	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9803735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998365	chr1:195755734-195779949	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195764400-195789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:195768400-195769200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links