Variant report

Variant	rs12086394
Chromosome Location	chr1:92873213-92873214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10747422	0.84[AFR][1000 genomes]
rs10747503	0.80[ASN][1000 genomes]
rs10875319	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875349	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164226	0.90[ASN][1000 genomes]
rs11164288	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164312	0.90[ASN][1000 genomes]
rs11164349	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164546	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11577839	0.90[ASN][1000 genomes]
rs11578012	0.90[ASN][1000 genomes]
rs11578400	0.90[ASN][1000 genomes]
rs11585255	0.90[ASN][1000 genomes]
rs11586989	0.80[ASN][1000 genomes]
rs11588044	0.90[ASN][1000 genomes]
rs11589858	0.90[ASN][1000 genomes]
rs11803383	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11803457	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024731	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12094293	0.90[ASN][1000 genomes]
rs12401372	0.90[ASN][1000 genomes]
rs12407622	0.90[ASN][1000 genomes]
rs12727665	0.90[ASN][1000 genomes]
rs12731923	0.90[ASN][1000 genomes]
rs12735898	0.90[ASN][1000 genomes]
rs12740246	0.80[ASN][1000 genomes]
rs12755781	0.90[ASN][1000 genomes]
rs12757533	0.90[ASN][1000 genomes]
rs1325435	0.81[EUR][1000 genomes]
rs1483022	0.80[ASN][1000 genomes]
rs1487536	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487540	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542685	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809606	0.90[ASN][1000 genomes]
rs1872007	0.90[ASN][1000 genomes]
rs2004814	0.90[ASN][1000 genomes]
rs2046620	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2087194	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391158	0.90[ASN][1000 genomes]
rs2391161	0.91[EUR][1000 genomes]
rs2391162	0.90[ASN][1000 genomes]
rs3103176	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3103178	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103181	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3118137	0.80[ASN][1000 genomes]
rs3122321	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3122323	0.80[EUR][1000 genomes]
rs3122327	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3131813	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131814	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131827	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131828	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34090353	0.90[ASN][1000 genomes]
rs35580949	0.90[ASN][1000 genomes]
rs3929737	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4393167	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414050	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4658300	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949888	0.90[ASN][1000 genomes]
rs4970699	0.90[ASN][1000 genomes]
rs4970713	0.90[ASN][1000 genomes]
rs6603962	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603971	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604082	0.80[ASN][1000 genomes]
rs6604088	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604090	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661384	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662379	0.90[ASN][1000 genomes]
rs6663114	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6663118	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6663278	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663905	0.90[ASN][1000 genomes]
rs6668803	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689366	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6692287	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6702267	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720457	0.90[ASN][1000 genomes]
rs733012	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745793	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517541	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518974	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520275	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524120	0.90[ASN][1000 genomes]
rs7539757	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7543947	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550680	0.90[ASN][1000 genomes]
rs7554154	0.84[EUR][1000 genomes]
rs912794	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9439911	0.90[ASN][1000 genomes]
rs9440085	0.91[EUR][1000 genomes]
rs9943178	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863200-92874400	Weak transcription	Thymus	Thymus
2	chr1:92870400-92875000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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