The 2.0 version of rSNPBase

Variant report

Variant rs12088142
Chromosome Location chr1:92836012-92836013
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92765800-92850000 Weak transcription Small Intestine intestine
2 chr1:92792600-92846600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:92792800-92850800 Weak transcription Fetal Heart heart
4 chr1:92795200-92846600 Weak transcription Gastric stomach
5 chr1:92795200-92850200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:92795200-92851400 Weak transcription Spleen Spleen
7 chr1:92798200-92846800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:92804400-92846400 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:92804400-92853200 Weak transcription NHEK skin
10 chr1:92815000-92853200 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:92816000-92851400 Weak transcription A549 lung
12 chr1:92816400-92846800 Weak transcription Primary monocytes fromperipheralblood blood
13 chr1:92817400-92851400 Weak transcription Rectal Smooth Muscle rectum
14 chr1:92818000-92837800 Weak transcription Esophagus oesophagus
15 chr1:92818000-92846200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:92818000-92846400 Weak transcription Brain Angular Gyrus brain
17 chr1:92818000-92851600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:92818000-92852600 Weak transcription Colon Smooth Muscle Colon
19 chr1:92818200-92851600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr1:92818800-92853000 Weak transcription Osteobl bone
21 chr1:92819000-92846400 Weak transcription Brain Hippocampus Middle brain
22 chr1:92819800-92837800 Weak transcription Pancreas Pancrea
23 chr1:92819800-92838000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:92820000-92839600 Weak transcription K562 blood
25 chr1:92823600-92853200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:92823800-92846600 Weak transcription Brain Cingulate Gyrus brain
27 chr1:92824000-92846600 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr1:92824000-92846600 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:92824000-92851400 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:92824400-92846200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:92824400-92846200 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:92824400-92850200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:92824400-92851400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:92824400-92852400 Weak transcription Colonic Mucosa Colon
35 chr1:92824600-92846200 Weak transcription Brain Germinal Matrix brain
36 chr1:92824600-92850200 Weak transcription Fetal Brain Female brain
37 chr1:92824600-92851400 Weak transcription Brain Substantia Nigra brain
38 chr1:92824600-92851400 Weak transcription Placenta Placenta
39 chr1:92824600-92851400 Weak transcription NHDF-Ad bronchial
40 chr1:92824800-92846200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:92825400-92849800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:92825400-92851400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:92825600-92837800 Weak transcription Aorta Aorta
44 chr1:92825600-92846200 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:92825600-92846400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:92825600-92851400 Weak transcription Fetal Kidney kidney
47 chr1:92825600-92852400 Weak transcription HepG2 liver
48 chr1:92825600-92852800 Weak transcription HMEC breast
49 chr1:92825800-92846000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:92825800-92846200 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015