Variant report

Variant	rs12088562
Chromosome Location	chr1:92905408-92905409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10399670	1.00[EUR][1000 genomes]
rs10399724	1.00[EUR][1000 genomes]
rs10399865	1.00[EUR][1000 genomes]
rs10399960	1.00[EUR][1000 genomes]
rs11164364	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11164660	1.00[EUR][1000 genomes]
rs11164793	1.00[EUR][1000 genomes]
rs11164794	1.00[EUR][1000 genomes]
rs11164795	1.00[EUR][1000 genomes]
rs11164797	1.00[EUR][1000 genomes]
rs11166390	1.00[EUR][1000 genomes]
rs11166543	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11485369	0.90[AFR][1000 genomes]
rs12057715	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12057860	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12058147	1.00[EUR][1000 genomes]
rs12059319	1.00[EUR][1000 genomes]
rs12059439	1.00[EUR][1000 genomes]
rs12059473	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12059645	1.00[EUR][1000 genomes]
rs12062143	1.00[EUR][1000 genomes]
rs12063053	1.00[EUR][1000 genomes]
rs12064015	1.00[EUR][1000 genomes]
rs12064732	1.00[EUR][1000 genomes]
rs12065163	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12065694	1.00[EUR][1000 genomes]
rs12065702	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12066980	1.00[EUR][1000 genomes]
rs12067302	1.00[EUR][1000 genomes]
rs12068883	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12069582	1.00[EUR][1000 genomes]
rs12069690	1.00[EUR][1000 genomes]
rs12069984	1.00[EUR][1000 genomes]
rs12070123	1.00[EUR][1000 genomes]
rs12070249	1.00[EUR][1000 genomes]
rs12071033	1.00[EUR][1000 genomes]
rs12072804	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12075870	1.00[EUR][1000 genomes]
rs12076399	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12076954	1.00[EUR][1000 genomes]
rs12078738	1.00[EUR][1000 genomes]
rs12080525	1.00[EUR][1000 genomes]
rs12081539	1.00[EUR][1000 genomes]
rs12083424	1.00[EUR][1000 genomes]
rs12084412	1.00[EUR][1000 genomes]
rs12086354	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12088142	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12088549	1.00[EUR][1000 genomes]
rs12089666	1.00[EUR][1000 genomes]
rs12091427	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12092747	1.00[EUR][1000 genomes]
rs12093038	1.00[EUR][1000 genomes]
rs12093590	1.00[EUR][1000 genomes]
rs12093905	1.00[EUR][1000 genomes]
rs12094086	1.00[EUR][1000 genomes]
rs12097184	1.00[EUR][1000 genomes]
rs1487538	1.00[EUR][1000 genomes]
rs17100275	1.00[EUR][1000 genomes]
rs17131606	1.00[EUR][1000 genomes]
rs17131614	1.00[EUR][1000 genomes]
rs17131625	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17131626	1.00[EUR][1000 genomes]
rs17131634	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28696358	1.00[EUR][1000 genomes]
rs28716853	1.00[EUR][1000 genomes]
rs35166258	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58471288	1.00[EUR][1000 genomes]
rs59366523	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59385116	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59800659	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60332284	1.00[EUR][1000 genomes]
rs6657876	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679077	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72958765	1.00[EUR][1000 genomes]
rs72958768	1.00[EUR][1000 genomes]
rs72958786	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72958791	1.00[EUR][1000 genomes]
rs72960809	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960813	1.00[EUR][1000 genomes]
rs72960817	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960824	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960880	1.00[EUR][1000 genomes]
rs72960900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72962603	1.00[EUR][1000 genomes]
rs72962608	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72962610	1.00[EUR][1000 genomes]
rs72962621	1.00[EUR][1000 genomes]
rs72962625	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72962628	1.00[EUR][1000 genomes]
rs7512045	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7552286	1.00[EUR][1000 genomes]
rs9660398	1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92902600-92907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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