The 2.0 version of rSNPBase

Variant report

Variant rs12089163
Chromosome Location chr1:94364026-94364027
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94345000-94374200 Weak transcription Gastric stomach
2 chr1:94345000-94374200 Weak transcription Spleen Spleen
3 chr1:94345200-94374000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:94345200-94374200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:94345400-94369400 Weak transcription Colonic Mucosa Colon
6 chr1:94345400-94373200 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:94345400-94373200 Weak transcription Brain Substantia Nigra brain
8 chr1:94345400-94373800 Weak transcription Fetal Stomach stomach
9 chr1:94345400-94374000 Weak transcription Right Ventricle heart
10 chr1:94345600-94369400 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:94345600-94369400 Weak transcription Fetal Lung lung
12 chr1:94345600-94369800 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:94345600-94371600 Weak transcription Fetal Kidney kidney
14 chr1:94345600-94373000 Weak transcription Fetal Brain Female brain
15 chr1:94345600-94373200 Weak transcription Brain Cingulate Gyrus brain
16 chr1:94345600-94373200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:94345600-94373200 Weak transcription Fetal Brain Male brain
18 chr1:94345600-94373400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:94345600-94373400 Weak transcription Psoas Muscle Psoas
20 chr1:94345600-94373400 Weak transcription Stomach Mucosa stomach
21 chr1:94345600-94373600 Weak transcription Brain Germinal Matrix brain
22 chr1:94345800-94366000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:94345800-94369200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr1:94345800-94371200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:94347400-94374200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:94347600-94367600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:94350400-94367200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:94350600-94369400 Strong transcription HMEC breast
29 chr1:94351200-94364600 Strong transcription Primary neutrophils fromperipheralblood blood
30 chr1:94351200-94367400 Strong transcription Liver Liver
31 chr1:94352800-94370400 Weak transcription Lung lung
32 chr1:94352800-94373000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:94353000-94367400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:94353600-94367200 Strong transcription Osteobl bone
35 chr1:94353600-94368200 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr1:94353800-94367200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:94354200-94370400 Weak transcription Small Intestine intestine
38 chr1:94354200-94372600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr1:94354400-94367000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:94354600-94367000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr1:94354600-94373400 Weak transcription H9 Cell Line embryonic stem cell
42 chr1:94356000-94367000 Strong transcription Adipose Nuclei Adipose
43 chr1:94356200-94367000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:94356600-94369400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:94356600-94372600 Weak transcription Colon Smooth Muscle Colon
46 chr1:94357200-94373800 Weak transcription Thymus Thymus
47 chr1:94357400-94364400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr1:94357400-94374000 Weak transcription Aorta Aorta
49 chr1:94357600-94369400 Weak transcription Primary T cells from cord blood blood
50 chr1:94357600-94374200 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015