Variant report

Variant	rs12089911
Chromosome Location	chr1:211286336-211286337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11119628	1.00[AMR][1000 genomes]
rs11119665	1.00[EUR][1000 genomes]
rs11119700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060095	1.00[AMR][1000 genomes]
rs12061710	1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	1.00[EUR][1000 genomes]
rs12063554	1.00[EUR][1000 genomes]
rs12064954	1.00[EUR][1000 genomes]
rs12065044	1.00[AMR][1000 genomes]
rs12065047	1.00[EUR][1000 genomes]
rs12067738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067778	1.00[EUR][1000 genomes]
rs12068018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070528	1.00[EUR][1000 genomes]
rs12071874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076586	1.00[EUR][1000 genomes]
rs12078498	1.00[EUR][1000 genomes]
rs12079263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079934	1.00[EUR][1000 genomes]
rs12084637	1.00[EUR][1000 genomes]
rs12086827	1.00[EUR][1000 genomes]
rs12089737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093116	1.00[AMR][1000 genomes]
rs12096590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57004496	1.00[AMR][1000 genomes]
rs57654955	1.00[EUR][1000 genomes]
rs58263592	1.00[EUR][1000 genomes]
rs60471497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60789444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071568	1.00[EUR][1000 genomes]
rs73071587	1.00[EUR][1000 genomes]
rs73073474	1.00[AMR][1000 genomes]
rs73073478	1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075406	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075420	1.00[EUR][1000 genomes]
rs73075431	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075455	1.00[EUR][1000 genomes]
rs73075457	1.00[EUR][1000 genomes]
rs73075496	1.00[EUR][1000 genomes]
rs73077469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74157510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389740	chr1:211283829-211286827	Genic enhancers Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211280800-211290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
3	chr1:211282400-211286400	Weak transcription	HSMM	muscle
4	chr1:211285600-211299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:211286000-211288000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links