Variant report

Variant	rs12092524
Chromosome Location	chr1:217091786-217091787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11572572	1.00[AMR][1000 genomes]
rs1339351	1.00[AMR][1000 genomes]
rs1339353	1.00[AMR][1000 genomes]
rs2153238	1.00[AMR][1000 genomes]
rs2813701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217082000-217095000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:217088600-217092400	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
4	chr1:217089200-217099400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:217090000-217092600	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:217091000-217097000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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