Variant report

Variant	rs12092898
Chromosome Location	chr1:195778570-195778571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195772551..195774478-chr1:195777510..195779769,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10218627	1.00[EUR][1000 genomes]
rs10494732	1.00[EUR][1000 genomes]
rs10921924	1.00[EUR][1000 genomes]
rs10921925	1.00[EUR][1000 genomes]
rs10921926	1.00[EUR][1000 genomes]
rs10921927	1.00[EUR][1000 genomes]
rs10921962	1.00[EUR][1000 genomes]
rs10921963	1.00[EUR][1000 genomes]
rs10921964	1.00[EUR][1000 genomes]
rs10921965	1.00[EUR][1000 genomes]
rs10921966	1.00[EUR][1000 genomes]
rs12064485	1.00[EUR][1000 genomes]
rs12064729	1.00[EUR][1000 genomes]
rs12075424	1.00[EUR][1000 genomes]
rs12086305	1.00[EUR][1000 genomes]
rs12091295	1.00[EUR][1000 genomes]
rs12091529	1.00[EUR][1000 genomes]
rs12091568	1.00[EUR][1000 genomes]
rs12092340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094869	1.00[EUR][1000 genomes]
rs12095849	1.00[EUR][1000 genomes]
rs13374044	1.00[EUR][1000 genomes]
rs13374137	1.00[EUR][1000 genomes]
rs13375919	1.00[EUR][1000 genomes]
rs13376008	1.00[EUR][1000 genomes]
rs13376090	1.00[EUR][1000 genomes]
rs13376278	1.00[EUR][1000 genomes]
rs13376291	1.00[EUR][1000 genomes]
rs16838964	1.00[EUR][1000 genomes]
rs16838968	1.00[EUR][1000 genomes]
rs16838969	1.00[EUR][1000 genomes]
rs16838971	1.00[EUR][1000 genomes]
rs16838972	1.00[EUR][1000 genomes]
rs41391648	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4276893	1.00[EUR][1000 genomes]
rs4540641	1.00[EUR][1000 genomes]
rs55654011	1.00[EUR][1000 genomes]
rs55917394	1.00[EUR][1000 genomes]
rs56677640	1.00[EUR][1000 genomes]
rs56759581	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57214547	1.00[EUR][1000 genomes]
rs57468767	1.00[EUR][1000 genomes]
rs58331542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59797206	1.00[EUR][1000 genomes]
rs60800880	1.00[EUR][1000 genomes]
rs61046734	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61512857	1.00[EUR][1000 genomes]
rs74132921	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132922	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132924	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132954	1.00[EUR][1000 genomes]
rs74133327	1.00[EUR][1000 genomes]
rs74133328	1.00[EUR][1000 genomes]
rs74133329	1.00[EUR][1000 genomes]
rs74133330	1.00[EUR][1000 genomes]
rs74133331	1.00[EUR][1000 genomes]
rs74133336	1.00[EUR][1000 genomes]
rs74133337	1.00[EUR][1000 genomes]
rs7537832	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538590	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540417	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990925	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998365	chr1:195755734-195779949	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195764400-195789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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