Variant report

Variant	rs12093762
Chromosome Location	chr1:215526534-215526535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10864176	0.85[AMR][1000 genomes]
rs11120553	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11120555	0.85[AMR][1000 genomes]
rs11120556	0.85[AMR][1000 genomes]
rs11120567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120573	0.83[AMR][1000 genomes]
rs11120574	0.83[AMR][1000 genomes]
rs12061570	0.83[AMR][1000 genomes]
rs12074526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077731	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095159	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095391	1.00[YRI][hapmap]
rs13374480	0.85[AMR][1000 genomes]
rs1911547	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4082520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4082521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4265403	0.85[AMR][1000 genomes]
rs56799360	0.85[AMR][1000 genomes]
rs57501351	0.85[AMR][1000 genomes]
rs58846680	1.00[EUR][1000 genomes]
rs61272547	0.85[AMR][1000 genomes]
rs6678266	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215519400-215530600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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