Variant report

Variant	rs12094293
Chromosome Location	chr1:92909463-92909464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92899650..92902559-chr1:92907075..92910056,2	K562	blood:
2	chr1:92907736..92909603-chr1:92915077..92916777,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10874637	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875319	1.00[JPT][hapmap]
rs10875349	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11164226	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164288	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11164312	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164546	0.90[ASN][1000 genomes]
rs11577572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11577839	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578012	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578400	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580693	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11581176	1.00[CHB][hapmap]
rs11585255	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586355	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11586989	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11588044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588153	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11589122	1.00[CHB][hapmap]
rs11589858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803457	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11804321	1.00[CHB][hapmap]
rs11805007	1.00[CHB][hapmap]
rs11808092	1.00[CHB][hapmap]
rs12024731	0.90[ASN][1000 genomes]
rs12086394	0.90[ASN][1000 genomes]
rs12401372	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12406749	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411162	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12724638	0.89[ASN][1000 genomes]
rs12727665	1.00[ASN][1000 genomes]
rs12731923	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735898	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12743520	1.00[CHB][hapmap]
rs12749317	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12753920	0.89[ASN][1000 genomes]
rs12755781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756786	1.00[CHB][hapmap]
rs12757533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759512	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384612	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384613	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415296	1.00[CHB][hapmap]
rs1487536	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1487540	1.00[JPT][hapmap]
rs1542685	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17519385	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17578686	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1809606	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004814	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046620	1.00[JPT][hapmap]
rs2069051	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087194	1.00[JPT][hapmap]
rs2391158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391162	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103176	1.00[JPT][hapmap]
rs3103178	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3103181	1.00[JPT][hapmap]
rs3131814	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3131828	1.00[JPT][hapmap]
rs34090353	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35015161	0.89[ASN][1000 genomes]
rs35580949	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790450	1.00[CHB][hapmap]
rs3929737	0.90[ASN][1000 genomes]
rs4393167	0.90[ASN][1000 genomes]
rs4414050	0.90[ASN][1000 genomes]
rs4642892	1.00[CHB][hapmap]
rs4658294	0.89[ASN][1000 genomes]
rs4658297	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658300	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4949888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970699	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970713	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58394161	0.83[ASN][1000 genomes]
rs6603962	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6603971	0.90[ASN][1000 genomes]
rs6603973	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6603974	0.83[ASN][1000 genomes]
rs6604088	0.90[ASN][1000 genomes]
rs6604090	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6661384	0.90[ASN][1000 genomes]
rs6662379	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662920	0.82[EUR][1000 genomes]
rs6663118	0.81[ASN][1000 genomes]
rs6663278	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6663905	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668803	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs66758257	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6702267	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs72720457	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733012	0.90[ASN][1000 genomes]
rs745793	0.90[ASN][1000 genomes]
rs7511656	0.89[ASN][1000 genomes]
rs7511669	0.89[ASN][1000 genomes]
rs7517541	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7518974	0.90[ASN][1000 genomes]
rs7520275	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7522081	0.89[ASN][1000 genomes]
rs7524120	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539757	0.90[ASN][1000 genomes]
rs7543947	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7550680	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9439911	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943178	0.90[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92906800-92910000	Weak transcription	Right Atrium	heart
2	chr1:92907400-92909600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:92907800-92909800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:92907800-92912200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:92908000-92909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:92908000-92909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:92908000-92909800	Weak transcription	Placenta	Placenta
8	chr1:92908000-92912000	Weak transcription	Fetal Stomach	stomach
9	chr1:92908000-92912400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:92908200-92909800	Weak transcription	NHEK	skin
11	chr1:92908200-92912200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:92908200-92912400	Weak transcription	Fetal Intestine Large	intestine
13	chr1:92908400-92909600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:92908400-92909600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:92908400-92912200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:92908400-92912400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:92909400-92909600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:92909400-92910000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:92909400-92910200	Enhancers	Dnd41	blood

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