Variant report

Variant	rs12095841
Chromosome Location	chr1:225073800-225073801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225073770..225075281-chr1:225082626..225084159,2	K562	blood:

Variant related genes	Relation type
ENSG00000185842	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10399941	0.85[ASN][1000 genomes]
rs10495231	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10799282	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10799283	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915733	0.96[ASN][1000 genomes]
rs10915743	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915744	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10915745	1.00[ASN][1000 genomes]
rs10915747	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915748	0.92[ASN][1000 genomes]
rs10915749	0.92[ASN][1000 genomes]
rs10915750	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915751	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915757	0.92[ASN][1000 genomes]
rs10915758	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10915761	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10915762	0.85[ASN][1000 genomes]
rs10915763	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11487461	1.00[ASN][1000 genomes]
rs12060676	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12061172	0.85[ASN][1000 genomes]
rs12061874	0.86[ASN][1000 genomes]
rs12068731	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12068939	0.96[ASN][1000 genomes]
rs12069537	0.96[ASN][1000 genomes]
rs12071453	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12072713	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12073050	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12074130	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12077191	0.96[ASN][1000 genomes]
rs12078470	0.85[AMR][1000 genomes]
rs12078559	0.85[AMR][1000 genomes]
rs12082397	0.92[ASN][1000 genomes]
rs12086122	0.92[ASN][1000 genomes]
rs12086373	0.92[ASN][1000 genomes]
rs12088836	0.85[ASN][1000 genomes]
rs12090519	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092671	0.85[AMR][1000 genomes]
rs12093086	0.92[ASN][1000 genomes]
rs12093545	0.92[ASN][1000 genomes]
rs12095812	0.92[ASN][1000 genomes]
rs12097532	0.92[ASN][1000 genomes]
rs12097577	0.92[ASN][1000 genomes]
rs1482278	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16858094	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16858965	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2244108	1.00[ASN][1000 genomes]
rs2244109	1.00[ASN][1000 genomes]
rs2244198	1.00[ASN][1000 genomes]
rs2254430	1.00[ASN][1000 genomes]
rs2406099	1.00[ASN][1000 genomes]
rs2449279	0.85[ASN][1000 genomes]
rs2449305	0.85[ASN][1000 genomes]
rs2449306	0.85[ASN][1000 genomes]
rs2456344	0.85[ASN][1000 genomes]
rs2456350	0.85[ASN][1000 genomes]
rs2456354	0.85[ASN][1000 genomes]
rs2501103	0.85[ASN][1000 genomes]
rs2662910	1.00[ASN][1000 genomes]
rs2662911	1.00[ASN][1000 genomes]
rs2662913	1.00[ASN][1000 genomes]
rs2802546	1.00[ASN][1000 genomes]
rs2802547	0.86[ASN][1000 genomes]
rs2802567	1.00[ASN][1000 genomes]
rs2802736	1.00[ASN][1000 genomes]
rs28510743	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28673436	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4256778	1.00[ASN][1000 genomes]
rs55708629	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56302122	0.85[ASN][1000 genomes]
rs57262741	0.85[AMR][1000 genomes]
rs59318794	1.00[ASN][1000 genomes]
rs60619295	1.00[ASN][1000 genomes]
rs6662177	0.85[ASN][1000 genomes]
rs6666025	0.85[AMR][1000 genomes]
rs6680233	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6689287	0.85[ASN][1000 genomes]
rs6694400	1.00[ASN][1000 genomes]
rs6700281	0.92[ASN][1000 genomes]
rs74146611	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74149417	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74149420	1.00[ASN][1000 genomes]
rs74149426	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74149428	0.92[ASN][1000 genomes]
rs74149429	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74149436	0.85[ASN][1000 genomes]
rs7527885	0.92[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225072400-225074000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225072600-225073800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr1:225072800-225074000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr1:225073400-225073800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr1:225073600-225074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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