Variant report

Variant	rs12097577
Chromosome Location	chr1:225028675-225028676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225019310..225022612-chr1:225026038..225029818,3	K562	blood:

rs_ID	r²[population]
rs10799282	0.92[ASN][1000 genomes]
rs10799283	0.92[ASN][1000 genomes]
rs10915733	0.96[ASN][1000 genomes]
rs10915743	0.92[ASN][1000 genomes]
rs10915744	0.92[ASN][1000 genomes]
rs10915745	0.92[ASN][1000 genomes]
rs10915747	0.85[ASN][1000 genomes]
rs10915748	0.85[ASN][1000 genomes]
rs10915749	0.85[ASN][1000 genomes]
rs10915750	0.85[ASN][1000 genomes]
rs10915751	0.85[ASN][1000 genomes]
rs10915757	0.85[ASN][1000 genomes]
rs10915758	0.85[ASN][1000 genomes]
rs11487461	0.92[ASN][1000 genomes]
rs11804750	0.86[AFR][1000 genomes]
rs12060676	0.92[ASN][1000 genomes]
rs12068731	0.92[ASN][1000 genomes]
rs12068939	0.96[ASN][1000 genomes]
rs12069537	0.96[ASN][1000 genomes]
rs12071453	0.85[ASN][1000 genomes]
rs12072713	0.85[ASN][1000 genomes]
rs12073050	0.92[ASN][1000 genomes]
rs12074130	0.85[ASN][1000 genomes]
rs12077191	0.96[ASN][1000 genomes]
rs12082397	0.85[ASN][1000 genomes]
rs12086122	0.85[ASN][1000 genomes]
rs12086373	0.85[ASN][1000 genomes]
rs12090519	0.92[ASN][1000 genomes]
rs12093086	0.85[ASN][1000 genomes]
rs12093545	0.85[ASN][1000 genomes]
rs12095812	0.85[ASN][1000 genomes]
rs12095841	0.92[ASN][1000 genomes]
rs12097532	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1482278	0.92[ASN][1000 genomes]
rs16858094	0.92[ASN][1000 genomes]
rs16858965	0.85[ASN][1000 genomes]
rs2244108	0.92[ASN][1000 genomes]
rs2244109	0.92[ASN][1000 genomes]
rs2244198	0.92[ASN][1000 genomes]
rs2254430	0.92[ASN][1000 genomes]
rs2406099	0.92[ASN][1000 genomes]
rs2662910	0.92[ASN][1000 genomes]
rs2662911	0.92[ASN][1000 genomes]
rs2662913	0.92[ASN][1000 genomes]
rs2802546	0.92[ASN][1000 genomes]
rs2802567	0.92[ASN][1000 genomes]
rs2802736	0.92[ASN][1000 genomes]
rs28510743	0.92[ASN][1000 genomes]
rs28673436	0.92[ASN][1000 genomes]
rs4256778	0.92[ASN][1000 genomes]
rs59318794	0.92[ASN][1000 genomes]
rs60619295	0.92[ASN][1000 genomes]
rs6694400	0.92[ASN][1000 genomes]
rs6700281	0.85[ASN][1000 genomes]
rs74149417	0.92[ASN][1000 genomes]
rs74149420	0.92[ASN][1000 genomes]
rs74149426	0.85[ASN][1000 genomes]
rs74149428	0.85[ASN][1000 genomes]
rs74149429	0.81[ASN][1000 genomes]
rs7527885	0.85[ASN][1000 genomes]

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225027600-225028800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:225027600-225029200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:225028200-225029000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:225028600-225028800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:225028600-225039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links