Variant report

Variant	rs12097622
Chromosome Location	chr1:225028786-225028787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225019310..225022612-chr1:225026038..225029818,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1316512	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1361923	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1436166	0.82[EUR][1000 genomes]
rs16856396	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16856435	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16856463	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16856829	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1806563	0.80[AMR][1000 genomes]
rs1892121	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1936632	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2016652	0.82[EUR][1000 genomes]
rs2252950	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2298257	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2574874	0.82[EUR][1000 genomes]
rs2574876	0.81[EUR][1000 genomes]
rs2662924	0.82[EUR][1000 genomes]
rs2662925	0.84[EUR][1000 genomes]
rs2662927	0.82[EUR][1000 genomes]
rs2662929	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802552	0.82[EUR][1000 genomes]
rs2802556	0.82[EUR][1000 genomes]
rs2802558	0.82[EUR][1000 genomes]
rs2802559	0.82[EUR][1000 genomes]
rs2802563	0.82[EUR][1000 genomes]
rs2802568	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802732	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802733	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802744	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2997478	0.88[EUR][1000 genomes]
rs2997501	0.86[EUR][1000 genomes]
rs4587536	0.93[EUR][1000 genomes]
rs55752315	0.93[EUR][1000 genomes]
rs56237431	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61540517	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225027600-225028800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:225027600-225029200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:225028200-225029000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:225028600-225028800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:225028600-225039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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