Variant report

Variant	rs12099480
Chromosome Location	chr12:39633594-39633595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899013	chr12:39567945-39732430	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv832375	chr12:39599362-39784722	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2753350	chr12:39617233-39669533	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832376	chr12:39633080-39808277	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39629600-39635000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:39630000-39634000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:39632600-39633800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:39632600-39634200	Enhancers	Fetal Intestine Large	intestine
5	chr12:39632600-39634400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:39632600-39634800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:39632600-39635000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:39632800-39634200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:39633200-39634000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:39633200-39634200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:39633400-39633800	Enhancers	HepG2	liver
12	chr12:39633400-39634000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr12:39633400-39634400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr12:39633400-39634600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr12:39633400-39634800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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