Variant report

Variant	rs12100775
Chromosome Location	chr14:32597415-32597416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32597351..32599387-chr14:32602127..32605349,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12100687	0.83[AFR][1000 genomes]
rs12100768	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12100930	0.81[AFR][1000 genomes]
rs12100931	1.00[ASN][1000 genomes]
rs12101226	1.00[ASN][1000 genomes]
rs28802314	1.00[ASN][1000 genomes]
rs7152059	1.00[ASN][1000 genomes]
rs7157301	1.00[ASN][1000 genomes]
rs8012001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32562600-32597600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32571800-32606800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:32571800-32614400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:32574400-32599400	Weak transcription	Aorta	Aorta
5	chr14:32574400-32615600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:32576000-32599000	Weak transcription	Psoas Muscle	Psoas
7	chr14:32577200-32605400	Weak transcription	Primary T cells from cord blood	blood
8	chr14:32577400-32625000	Weak transcription	Small Intestine	intestine
9	chr14:32577800-32603200	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:32577800-32603800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:32578000-32600000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:32580000-32598000	Weak transcription	NH-A	brain
13	chr14:32583000-32597600	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:32587600-32603600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:32588800-32598200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:32590000-32623000	Weak transcription	HSMMtube	muscle
17	chr14:32591600-32598200	Weak transcription	HSMM	muscle
18	chr14:32591600-32603200	Weak transcription	Hela-S3	cervix
19	chr14:32591600-32621200	Weak transcription	NHLF	lung
20	chr14:32592000-32597600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:32592200-32598000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:32592200-32598000	Weak transcription	NHDF-Ad	bronchial
23	chr14:32592200-32601600	Weak transcription	HUVEC	blood vessel
24	chr14:32592200-32606400	Weak transcription	Brain Substantia Nigra	brain
25	chr14:32592400-32598000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:32592800-32614400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:32593000-32601800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:32593600-32606400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:32593800-32597800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:32593800-32607200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:32594000-32597600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:32594000-32599400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:32594400-32597600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:32595200-32598000	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr14:32595800-32597600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:32595800-32597600	Weak transcription	NHEK	skin
37	chr14:32595800-32597800	Weak transcription	Fetal Heart	heart
38	chr14:32595800-32597800	Weak transcription	HMEC	breast
39	chr14:32595800-32598200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:32595800-32598400	Weak transcription	Brain Anterior Caudate	brain
41	chr14:32595800-32598600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:32595800-32605600	Weak transcription	Primary B cells from cord blood	blood
43	chr14:32595800-32605600	Weak transcription	Fetal Lung	lung
44	chr14:32595800-32605800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:32596000-32597600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:32596000-32597600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:32596000-32598200	Weak transcription	Osteobl	bone
48	chr14:32596000-32603400	Weak transcription	Fetal Kidney	kidney
49	chr14:32596000-32605600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:32596000-32606600	Weak transcription	Brain Angular Gyrus	brain

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