Variant report

Variant	rs12101294
Chromosome Location	chr15:53019224-53019225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:53008460..53014321-chr15:53016290..53019599,5	MCF-7	breast:
2	chr15:52966586..52968208-chr15:53018199..53019999,2	MCF-7	breast:
3	chr15:52967780..52973455-chr15:53015921..53024493,22	MCF-7	breast:
4	chr15:52968697..52973342-chr15:53018163..53028590,24	MCF-7	breast:
5	chr15:53014375..53016603-chr15:53017308..53019885,2	MCF-7	breast:
6	chr15:52587244..52588799-chr15:53018696..53021344,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128833	Chromatin interaction
ENSG00000047346	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17709181	1.00[EUR][1000 genomes]
rs2120441	1.00[EUR][1000 genomes]
rs2120443	1.00[EUR][1000 genomes]
rs28403097	1.00[EUR][1000 genomes]
rs28515720	1.00[EUR][1000 genomes]
rs28566485	1.00[EUR][1000 genomes]
rs28624935	1.00[EUR][1000 genomes]
rs28713382	1.00[EUR][1000 genomes]
rs56346629	1.00[EUR][1000 genomes]
rs56710422	1.00[EUR][1000 genomes]
rs57072856	1.00[EUR][1000 genomes]
rs57094771	1.00[EUR][1000 genomes]
rs57960122	1.00[EUR][1000 genomes]
rs58028943	1.00[EUR][1000 genomes]
rs59569753	1.00[EUR][1000 genomes]
rs60407782	1.00[EUR][1000 genomes]
rs60882420	1.00[EUR][1000 genomes]
rs61364465	1.00[EUR][1000 genomes]
rs7173312	1.00[EUR][1000 genomes]
rs7176412	1.00[EUR][1000 genomes]
rs731607	1.00[EUR][1000 genomes]
rs74014803	1.00[EUR][1000 genomes]
rs74014805	1.00[EUR][1000 genomes]
rs74016851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1049055	chr15:52990467-53030603	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1035212	chr15:52995637-53030603	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049144	chr15:52995637-53039179	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049619	chr15:52995637-53041887	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv515534	chr15:52998262-53025692	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv569425	chr15:53001538-53038488	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv569426	chr15:53014003-53046210	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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