Variant report

Variant	rs12101929
Chromosome Location	chr15:76757897-76757898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16968349	1.00[GIH][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs28509286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28646074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28835608	0.86[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs28872583	1.00[AMR][1000 genomes]
rs55666147	1.00[AMR][1000 genomes]
rs56312206	1.00[AMR][1000 genomes]
rs7169825	0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7174835	0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs74024123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024162	1.00[AMR][1000 genomes]
rs8025581	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027086	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032219	1.00[AMR][1000 genomes]
rs9783735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
4	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
6	chr15:76753200-76762800	Weak transcription	Esophagus	oesophagus
7	chr15:76753400-76760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:76753600-76761600	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
10	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
12	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:76754800-76758000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:76754800-76762000	Weak transcription	Ovary	ovary
15	chr15:76754800-76764400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:76755200-76761200	Weak transcription	Brain Anterior Caudate	brain
17	chr15:76755600-76764600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:76757400-76760200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:76757600-76758600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:76757600-76759600	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr15:76757800-76759400	ZNF genes & repeats	Liver	Liver
22	chr15:76757800-76765200	Weak transcription	Aorta	Aorta

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