Variant report

Variant	rs12102804
Chromosome Location	chr16:80191607-80191608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11150248	0.85[EUR][1000 genomes]
rs11150249	0.86[EUR][1000 genomes]
rs1382389	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16952546	0.86[ASN][1000 genomes]
rs1871209	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2169804	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2169806	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28733382	0.84[ASN][1000 genomes]
rs4889112	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4889115	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4889116	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6564744	0.95[YRI][hapmap]
rs7186149	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7189918	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7193651	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7205467	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8045772	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8045793	0.84[EUR][1000 genomes]
rs8045952	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8047391	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8060188	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs8061813	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9673176	0.83[ASN][1000 genomes]
rs9673185	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9926605	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9930130	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9940589	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv17541	chr16:80191183-80191913	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
4	esv15881	chr16:80191198-80193029	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80186400-80191800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:80186400-80191800	Weak transcription	NH-A	brain
3	chr16:80186600-80191800	Weak transcription	Osteobl	bone
4	chr16:80186600-80192600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:80186600-80197600	Weak transcription	HSMMtube	muscle
6	chr16:80191200-80193600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:80191600-80193600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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