Variant report

Variant	rs12109374
Chromosome Location	chr5:59607810-59607811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514891	0.89[YRI][hapmap]
rs4640751	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4643905	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58718949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60264107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6874388	0.97[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6879098	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs6879388	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106748	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341019	0.81[YRI][hapmap];0.92[AMR][1000 genomes]
rs7703345	1.00[YRI][hapmap]
rs7721376	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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