Variant report

Variant	rs12111294
Chromosome Location	chr6:55142029-55142030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55141267..55142162-chr6:55817824..55818554,3	MCF-7	breast:

rs_ID	r²[population]
rs12111299	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4327697	1.00[EUR][1000 genomes]
rs4428489	1.00[EUR][1000 genomes]
rs60631253	1.00[EUR][1000 genomes]
rs61515728	1.00[EUR][1000 genomes]
rs6915116	1.00[EUR][1000 genomes]
rs6916909	0.83[YRI][hapmap]
rs6933855	1.00[EUR][1000 genomes]
rs73437015	1.00[EUR][1000 genomes]
rs73437019	1.00[EUR][1000 genomes]
rs73437034	1.00[EUR][1000 genomes]
rs7770157	1.00[EUR][1000 genomes]
rs937637	1.00[EUR][1000 genomes]
rs991734	1.00[CEU][hapmap]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55141200-55142400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:55141400-55142400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:55141400-55143200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:55141600-55142400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:55141800-55142200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:55141800-55142200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:55141800-55142200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:55141800-55142200	Enhancers	Fetal Kidney	kidney
9	chr6:55141800-55142200	Active TSS	Stomach Smooth Muscle	stomach
10	chr6:55141800-55142400	Active TSS	Right Atrium	heart
11	chr6:55141800-55142400	Active TSS	Osteobl	bone
12	chr6:55141800-55142600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:55141800-55143200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:55141800-55143200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:55141800-55143400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:55141800-55143400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:55142000-55142200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:55142000-55142200	Enhancers	Fetal Lung	lung
19	chr6:55142000-55142200	Active TSS	Right Ventricle	heart
20	chr6:55142000-55142400	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:55142000-55142400	Enhancers	Placenta	Placenta
22	chr6:55142000-55142400	Enhancers	Fetal Stomach	stomach
23	chr6:55142000-55142400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:55142000-55142400	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:55142000-55143200	Enhancers	Ovary	ovary
26	chr6:55142000-55143400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:55142000-55143400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:55142000-55143400	Enhancers	Fetal Heart	heart

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