Variant report
Variant | rs12111721 |
---|---|
Chromosome Location | chr7:137768806-137768807 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10226024 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10265064 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10278929 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10280600 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10280818 | 0.81[YRI][hapmap];0.80[AMR][1000 genomes] |
rs10954601 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11760991 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs13243602 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1817686 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs2035648 | 0.83[YRI][hapmap] |
rs2035736 | 0.83[YRI][hapmap] |
rs2352140 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs28533201 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs28609414 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4728430 | 1.00[CEU][hapmap];0.95[CHB][hapmap] |
rs4732288 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs57020142 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6467734 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6467736 | 0.83[YRI][hapmap] |
rs6943498 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs8180809 | 0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv518070 | chr7:137534627-137808839 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
2 | nsv831151 | chr7:137711447-137865471 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
3 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
4 | nsv437032 | chr7:137753091-137773291 | Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:137768400-137769400 | Genic enhancers | Liver | Liver |
2 | chr7:137768800-137769200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |