Variant report

Variant	rs12114072
Chromosome Location	chr8:49690240-49690241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11777585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779344	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785222	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11787088	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12114226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706472	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17712404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49690800	Weak transcription	Fetal Lung	lung
2	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
4	chr8:49687000-49690400	Weak transcription	Pancreas	Pancrea
5	chr8:49687000-49693000	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:49688800-49691400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:49689000-49690600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:49689000-49691800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:49689200-49692400	Weak transcription	Aorta	Aorta
10	chr8:49689600-49692000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:49689800-49692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:49690000-49691000	Enhancers	Placenta	Placenta
13	chr8:49690000-49691200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:49690000-49691800	Enhancers	NHLF	lung
15	chr8:49690000-49692200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr8:49690200-49690600	Weak transcription	Fetal Kidney	kidney
17	chr8:49690200-49691000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:49690200-49692000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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