Variant report

Variant	rs12115021
Chromosome Location	chr8:11289685-11289686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:11289441-11289695	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
C8orf12	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2001462	0.90[GIH][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs3021512	0.81[EUR][1000 genomes]
rs3021517	1.00[GIH][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs3021518	0.83[EUR][1000 genomes]
rs55764254	0.85[EUR][1000 genomes]
rs56138616	0.85[EUR][1000 genomes]
rs56388647	0.85[EUR][1000 genomes]
rs60320871	0.82[EUR][1000 genomes]
rs66934548	0.82[EUR][1000 genomes]
rs67350204	0.81[EUR][1000 genomes]
rs67526040	0.82[EUR][1000 genomes]
rs67539049	0.83[EUR][1000 genomes]
rs67684445	0.82[EUR][1000 genomes]
rs67909842	0.85[EUR][1000 genomes]
rs67932868	0.82[EUR][1000 genomes]
rs68063127	0.82[EUR][1000 genomes]
rs73207493	0.81[EUR][1000 genomes]
rs73207496	0.85[EUR][1000 genomes]
rs73207498	0.87[EUR][1000 genomes]
rs73207500	0.85[EUR][1000 genomes]
rs73209223	0.82[EUR][1000 genomes]
rs73546310	0.82[EUR][1000 genomes]
rs73546312	0.82[EUR][1000 genomes]
rs7832089	0.81[EUR][1000 genomes]
rs7835996	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv470183	chr8:11236975-11307118	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv465465	chr8:11245064-11307118	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv610275	chr8:11245064-11307118	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv522860	chr8:11253879-11330364	Bivalent/Poised TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv890357	chr8:11286146-11330364	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12115021	FAM167A	cis	parietal	SCAN
rs12115021	MFHAS1	cis	cerebellum	SCAN
rs12115021	TDH	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11271600-11291000	Weak transcription	Pancreas	Pancrea
2	chr8:11276600-11291200	Weak transcription	Gastric	stomach
3	chr8:11280600-11308800	Weak transcription	Primary B cells from cord blood	blood
4	chr8:11280800-11297600	Weak transcription	Spleen	Spleen
5	chr8:11286000-11295200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:11286200-11306400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:11286600-11296200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:11287000-11289800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:11287200-11289800	Enhancers	Osteobl	bone
10	chr8:11287400-11291400	Weak transcription	Left Ventricle	heart
11	chr8:11287400-11296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:11287400-11296400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:11287400-11297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:11287600-11291600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:11287800-11291000	Weak transcription	Brain Angular Gyrus	brain
16	chr8:11287800-11300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:11287800-11300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:11287800-11313600	Weak transcription	Right Atrium	heart
19	chr8:11288000-11290800	Weak transcription	Brain Substantia Nigra	brain
20	chr8:11288000-11290800	Weak transcription	Fetal Heart	heart
21	chr8:11288000-11297600	Weak transcription	HSMM	muscle
22	chr8:11288200-11291000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:11288200-11300200	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:11288400-11291000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:11289000-11289800	Enhancers	Brain Anterior Caudate	brain
26	chr8:11289000-11291000	Weak transcription	NHEK	skin
27	chr8:11289000-11295400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:11289000-11295600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:11289200-11291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:11289400-11290400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:11289400-11291000	Weak transcription	Fetal Thymus	thymus
32	chr8:11289600-11289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:11289600-11289800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr8:11289600-11290800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:11289600-11290800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:11289600-11291600	Weak transcription	Thymus	Thymus

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