Variant report
| Variant | rs12115136 |
|---|---|
| Chromosome Location | chr8:63912860-63912861 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10100456 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs10106324 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs12335094 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12679222 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2043525 | 1.00[CHB][hapmap] |
| rs2736676 | 0.89[ASN][1000 genomes] |
| rs4279586 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4377959 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4397399 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4400383 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4446729 | 1.00[CHB][hapmap] |
| rs4449783 | 0.89[ASN][1000 genomes] |
| rs4592024 | 0.89[ASN][1000 genomes] |
| rs5007413 | 0.96[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs6472066 | 0.89[ASN][1000 genomes] |
| rs6998134 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs6998383 | 0.89[ASN][1000 genomes] |
| rs7003413 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs7004087 | 0.82[CEU][hapmap] |
| rs7010484 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7387326 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7388305 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs7818905 | 0.89[ASN][1000 genomes] |
| rs7839216 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7839874 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv6227 | chr8:63892087-63936952 | Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63906800-63926200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr8:63909600-63916400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
