Variant report

Variant	rs1211518
Chromosome Location	chr3:34429090-34429091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013979	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1191622	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1191624	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1191625	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1212278	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12186048	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12487411	0.94[ASN][1000 genomes]
rs12629841	0.90[ASN][1000 genomes]
rs13083647	0.88[ASN][1000 genomes]
rs1317104	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358615	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1358616	0.87[ASN][1000 genomes]
rs1406568	1.00[ASN][1000 genomes]
rs1518885	0.95[ASN][1000 genomes]
rs1518886	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1518887	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529072	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1529075	0.94[ASN][1000 genomes]
rs1609403	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17031629	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17031637	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1881685	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919618	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1919619	0.82[EUR][1000 genomes]
rs1919620	0.82[EUR][1000 genomes]
rs1919621	0.94[ASN][1000 genomes]
rs1919622	0.87[ASN][1000 genomes]
rs1949470	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2077806	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2167040	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2218729	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2951002	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34843235	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34896219	1.00[ASN][1000 genomes]
rs35488362	0.91[ASN][1000 genomes]
rs35703530	1.00[ASN][1000 genomes]
rs35905703	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35929503	1.00[ASN][1000 genomes]
rs4533591	0.90[ASN][1000 genomes]
rs4678468	0.81[AMR][1000 genomes]
rs67251788	0.94[ASN][1000 genomes]
rs6768570	0.81[AMR][1000 genomes]
rs6804250	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9311051	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9816663	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9824579	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9836767	0.81[EUR][1000 genomes]
rs9842247	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9854604	0.81[EUR][1000 genomes]
rs9858557	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9861656	0.82[EUR][1000 genomes]
rs9880774	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34423200-34430600	Weak transcription	Aorta	Aorta
2	chr3:34427400-34429600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:34427400-34431200	Enhancers	Fetal Brain Male	brain
4	chr3:34428200-34431000	Enhancers	Fetal Brain Female	brain
5	chr3:34429000-34429800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:34429000-34430400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links