Variant report

Variant	rs12117620
Chromosome Location	chr1:71051162-71051163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11209644	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11209645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126878	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12128996	0.81[AMR][1000 genomes]
rs12129335	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12140094	0.81[AMR][1000 genomes]
rs35890412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55933100	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56132847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61776729	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71012600-71059800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:71045000-71054400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:71048000-71051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:71050600-71051800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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