Variant report

Variant	rs12118119
Chromosome Location	chr1:211098193-211098194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10158086	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119634	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11119647	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11119659	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11119663	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1160574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1160575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12117040	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12122248	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12122974	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124842	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126553	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126937	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128894	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12131213	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12131362	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12133961	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12133981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12136201	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12138903	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12139813	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12139930	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12140731	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12142251	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12143882	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12144937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12145265	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12564720	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12566441	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12566456	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1501552	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17017105	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4146993	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61577575	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72468065	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9645356	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211093400-211110800	Weak transcription	HSMM	muscle

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