Variant report

Variant	rs12118235
Chromosome Location	chr1:215348781-215348782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10864155	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11806269	1.00[ASN][1000 genomes]
rs11809041	1.00[ASN][1000 genomes]
rs12118508	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118830	1.00[ASN][1000 genomes]
rs12121815	0.82[AMR][1000 genomes]
rs12121939	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123237	1.00[ASN][1000 genomes]
rs12127285	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12132201	1.00[ASN][1000 genomes]
rs12138417	1.00[CEU][hapmap]
rs12141564	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146057	1.00[ASN][1000 genomes]
rs1339404	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339407	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023977	1.00[ASN][1000 genomes]
rs17024348	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024370	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17604089	1.00[ASN][1000 genomes]
rs17606405	1.00[ASN][1000 genomes]
rs34999070	1.00[ASN][1000 genomes]
rs56662669	1.00[ASN][1000 genomes]
rs56720553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440894	1.00[ASN][1000 genomes]
rs74140846	1.00[ASN][1000 genomes]
rs74140868	1.00[ASN][1000 genomes]
rs74140948	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74140950	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531398	1.00[ASN][1000 genomes]
rs7543935	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755576	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215340800-215355000	Weak transcription	Osteobl	bone
2	chr1:215342200-215351800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215343800-215349600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:215346000-215352000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215346200-215349000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:215348000-215355000	Weak transcription	Brain Germinal Matrix	brain
7	chr1:215348400-215349200	Strong transcription	NHDF-Ad	bronchial

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