Variant report

Variant	rs12121815
Chromosome Location	chr1:215360725-215360726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1015244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12061587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12069528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12069967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12118235	0.82[AMR][1000 genomes]
rs12121939	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12141564	1.00[CEU][hapmap]
rs1339404	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1339407	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1339409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1538545	0.84[ASN][1000 genomes]
rs1538546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17024370	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1947364	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2363553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2802656	1.00[JPT][hapmap]
rs4433363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4573492	1.00[CHB][hapmap]
rs55790910	0.84[ASN][1000 genomes]
rs56233922	0.84[ASN][1000 genomes]
rs56720553	0.86[AMR][1000 genomes]
rs61818338	0.84[ASN][1000 genomes]
rs61818341	0.84[ASN][1000 genomes]
rs61818342	0.84[ASN][1000 genomes]
rs61818343	0.84[ASN][1000 genomes]
rs61818346	0.84[ASN][1000 genomes]
rs61818347	0.95[ASN][1000 genomes]
rs61818348	0.95[ASN][1000 genomes]
rs61818351	0.95[ASN][1000 genomes]
rs6665177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs74140948	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs74140950	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7530450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7535436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7551303	0.81[AMR][1000 genomes]
rs7551562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7553910	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215360800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215356000-215364800	Weak transcription	NHLF	lung
3	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
4	chr1:215356200-215361800	Weak transcription	HSMM	muscle
5	chr1:215356200-215364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:215356200-215365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:215356400-215361400	Weak transcription	NHDF-Ad	bronchial
8	chr1:215356400-215361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:215356600-215361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:215356600-215361000	Weak transcription	Osteobl	bone
11	chr1:215360000-215361400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:215360600-215363000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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