Variant report

Variant	rs12123146
Chromosome Location	chr1:220624476-220624477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12025515	1.00[JPT][hapmap]
rs12032166	0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs12088244	0.85[ASN][1000 genomes]
rs12405059	0.91[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12407585	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407611	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12408337	0.81[ASN][1000 genomes]
rs12568419	0.91[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12726257	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3849283	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4354541	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220621200-220624600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:220622200-220624600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:220622200-220624800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:220624000-220624800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:220624000-220625400	Enhancers	Fetal Heart	heart
7	chr1:220624200-220625000	Enhancers	Fetal Intestine Large	intestine
8	chr1:220624200-220625000	Enhancers	Placenta	Placenta
9	chr1:220624200-220625200	Enhancers	Adipose Nuclei	Adipose
10	chr1:220624200-220625200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
11	chr1:220624200-220625400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:220624200-220625600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:220624200-220626200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:220624400-220624800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:220624400-220625200	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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