Variant report

Variant	rs12128894
Chromosome Location	chr1:211103482-211103483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10158086	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119634	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11119647	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11119659	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11119663	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1160574	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1160575	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12117040	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12118119	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12122248	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12122974	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12124842	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12126553	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12126937	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12131213	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12131362	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12133961	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12133981	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12136201	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12138903	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12139813	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12139930	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12140731	0.94[AMR][1000 genomes]
rs12142251	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12143882	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12144937	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12145265	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12564720	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12566441	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12566456	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1501552	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17017105	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4146993	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61577575	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72468065	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9645356	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211093400-211110800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links