Variant report

Variant	rs12131054
Chromosome Location	chr1:215228234-215228235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494991	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10494993	0.82[CHD][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10779646	0.82[CEU][hapmap]
rs10779650	0.83[CEU][hapmap]
rs10779651	0.83[CEU][hapmap]
rs10864148	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11120479	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1157493	0.89[ASW][hapmap];0.86[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12038094	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17024148	0.80[MEX][hapmap];0.91[TSI][hapmap]
rs17024179	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2123331	0.91[TSI][hapmap]
rs4655277	0.83[CEU][hapmap]
rs4655388	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6540882	0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs6684084	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215222800-215242200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:215225600-215229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:215226800-215228600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215226800-215228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215226800-215228600	Weak transcription	NHLF	lung
6	chr1:215226800-215230000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:215226800-215230400	Weak transcription	Osteobl	bone
8	chr1:215227200-215228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:215227400-215228600	Enhancers	NHDF-Ad	bronchial
10	chr1:215227800-215228600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:215227800-215229000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:215227800-215229400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:215228000-215229400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:215228000-215230600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:215228000-215231400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:215228000-215233400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:215228000-215237200	Weak transcription	Pancreas	Pancrea
18	chr1:215228200-215229000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:215228200-215229400	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links