Variant report

Variant	rs12132633
Chromosome Location	chr1:169756215-169756216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169751349..169757764-chr1:169760418..169766538,11	K562	blood:
2	chr1:169753568..169755601-chr1:169755944..169758258,2	MCF-7	breast:
3	chr1:169747522..169750361-chr1:169754241..169756814,2	MCF-7	breast:
4	chr1:169755971..169761352-chr1:169761713..169764832,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171806	Chromatin interaction
ENSG00000000460	Chromatin interaction

Extended variants
information (count: 264 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:263)

rs_ID	r²[population]
rs1046058	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10489173	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10489174	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10489176	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800489	0.83[EUR][1000 genomes]
rs10919253	0.93[EUR][1000 genomes]
rs12116524	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12116601	0.89[EUR][1000 genomes]
rs12116650	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12117794	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12118431	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12118559	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12119368	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12119386	0.93[EUR][1000 genomes]
rs12119473	0.87[EUR][1000 genomes]
rs12119635	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12120114	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120647	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120727	0.93[EUR][1000 genomes]
rs12121045	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12121113	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12121313	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121443	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12121606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121614	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12121681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122419	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12122582	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12122776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123432	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12123483	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12123806	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12123835	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12123942	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124032	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12124561	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12124750	0.80[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12124775	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12125023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125595	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs12125679	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs12126591	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12127211	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12127500	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12128308	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12128695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128929	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12129052	0.83[EUR][1000 genomes]
rs12129443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129951	0.83[EUR][1000 genomes]
rs12130263	0.83[EUR][1000 genomes]
rs12130372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130784	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131192	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs12131357	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12131444	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12132222	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12132384	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12132692	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133074	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12133108	0.83[EUR][1000 genomes]
rs12133369	0.83[EUR][1000 genomes]
rs12134837	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12134886	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12135057	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12135361	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12135559	0.93[EUR][1000 genomes]
rs12135642	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12135726	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12136425	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12137905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12138861	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12140134	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12140656	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12140984	0.83[EUR][1000 genomes]
rs12141317	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12141572	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12142093	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12142355	0.86[EUR][1000 genomes]
rs12142511	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12143057	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12143161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12143301	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12143739	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12144122	0.89[EUR][1000 genomes]
rs12144204	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12144207	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12144624	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12144683	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12145417	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145458	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12145504	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145574	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12146043	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1496	0.93[EUR][1000 genomes]
rs1569457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16828222	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs16862751	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs17527744	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529304	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17529791	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17543370	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17543611	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17543730	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17544586	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17544823	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17593568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17601414	0.93[EUR][1000 genomes]
rs17601582	0.93[EUR][1000 genomes]
rs17601631	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17602051	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs17602072	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17602610	1.00[AFR][1000 genomes]
rs17602701	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17603570	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17603666	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1800015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1800016	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1805193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2057249	0.83[CEU][hapmap];1.00[AFR][1000 genomes]
rs2093050	0.83[EUR][1000 genomes]
rs2145046	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2272919	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2272920	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2272921	0.91[EUR][1000 genomes]
rs2474698	0.83[CEU][hapmap]
rs2474705	0.81[EUR][1000 genomes]
rs2750018	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2750019	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806384	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806385	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806387	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806389	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806390	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2806392	0.83[CEU][hapmap]
rs28652825	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3766135	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3766141	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3766143	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3766152	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3917388	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917396	1.00[ASN][1000 genomes]
rs3917400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917424	1.00[ASN][1000 genomes]
rs3917425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41272481	0.93[EUR][1000 genomes]
rs41304562	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4519	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs478116	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs486431	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs490469	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs495092	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4987299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987340	1.00[CEU][hapmap]
rs4987343	1.00[CEU][hapmap]
rs4987345	1.00[CEU][hapmap]
rs4987348	1.00[AFR][1000 genomes]
rs4987363	1.00[CEU][hapmap]
rs4987395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511443	0.83[CEU][hapmap]
rs517649	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs518928	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs521165	0.83[EUR][1000 genomes]
rs522017	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs536080	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs5361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs536358	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs5367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs537976	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs541711	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs544008	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs545954	0.83[CEU][hapmap]
rs545963	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs549537	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs553209	0.83[EUR][1000 genomes]
rs554060	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs558782	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs559969	0.83[EUR][1000 genomes]
rs560414	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs562054	1.00[AFR][1000 genomes]
rs56230202	1.00[ASN][1000 genomes]
rs562837	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs565397	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs565626	0.83[CEU][hapmap]
rs571806	0.81[EUR][1000 genomes]
rs57357201	1.00[ASN][1000 genomes]
rs575147	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs576225	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs578916	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs57952001	0.83[EUR][1000 genomes]
rs579553	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs582900	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs590181	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs591202	0.83[EUR][1000 genomes]
rs591559	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs593406	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs595984	0.81[EUR][1000 genomes]
rs598763	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs601355	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs602556	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs606047	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs606409	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs607707	0.83[CEU][hapmap];1.00[AFR][1000 genomes]
rs612548	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs615485	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs618149	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs629593	1.00[AFR][1000 genomes]
rs638486	0.83[CEU][hapmap]
rs642352	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs644834	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs646730	0.82[EUR][1000 genomes]
rs647113	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs648502	0.83[EUR][1000 genomes]
rs654664	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs655133	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs655474	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs656334	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs656848	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs657254	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs659363	0.83[CEU][hapmap]
rs664598	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs664962	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs665774	0.83[CEU][hapmap]
rs6681685	0.83[EUR][1000 genomes]
rs671921	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs672843	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs673656	0.81[EUR][1000 genomes]
rs673789	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs674896	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs675394	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs676020	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs677630	0.83[EUR][1000 genomes]
rs685155	0.83[CEU][hapmap]
rs686519	0.83[CEU][hapmap]
rs686911	0.80[CEU][hapmap];1.00[AFR][1000 genomes]
rs74122419	0.89[EUR][1000 genomes]
rs850771	0.83[CEU][hapmap]
rs909628	1.00[CEU][hapmap]
rs9645328	0.93[EUR][1000 genomes]
rs9645329	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs12132633	METTL18	cis	lung	GTEx
rs12132633	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs12132633	METTL18	cis	Nerve Tibial	GTEx
rs12132633	C1orf156	cis	uninvolved skin	skin_eQTL
rs12132633	METTL18	cis	Artery Aorta	GTEx
rs12132633	METTL18	cis	Thyroid	GTEx
rs12132633	METTL18	cis	Muscle Skeletal	GTEx
rs12132633	METTL18	cis	Artery Tibial	GTEx
rs12132633	METTL18	cis	Adipose Subcutaneous	GTEx
rs12132633	METTL18	cis	Stomach	GTEx
rs12132633	METTL18	cis	Esophagus Muscularis	GTEx
rs12132633	C1orf156	cis	lesional skin	skin_eQTL
rs12132633	METTL18	cis	Esophagus Mucosa	GTEx
rs12132633	METTL18	cis	Heart Left Ventricle	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169749400-169761400	Weak transcription	Liver	Liver
2	chr1:169750800-169762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:169751600-169760200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:169751600-169762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:169752600-169760200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:169753600-169763000	Weak transcription	HMEC	breast
7	chr1:169754400-169760800	Weak transcription	Dnd41	blood
8	chr1:169755000-169760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links