Variant report

Variant	rs12134819
Chromosome Location	chr1:211202705-211202706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11119659	0.88[AFR][1000 genomes]
rs11119660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119663	0.94[AFR][1000 genomes]
rs12118930	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128030	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12136201	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap]
rs12139813	0.82[AFR][1000 genomes]
rs12142251	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs12564720	0.88[AFR][1000 genomes]
rs17017105	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.88[AFR][1000 genomes]
rs4146993	0.88[AFR][1000 genomes]
rs72468065	0.88[AFR][1000 genomes]
rs9645356	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
3	chr1:211194400-211209200	Weak transcription	HSMM	muscle
4	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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