Variant report

Variant	rs12136185
Chromosome Location	chr1:215321620-215321621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10864155	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118508	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12127285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12138874	0.88[AFR][1000 genomes]
rs12141564	0.84[EUR][1000 genomes]
rs12146036	0.81[AFR][1000 genomes]
rs17024348	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34999070	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56720553	0.90[AFR][1000 genomes]
rs57440894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7543935	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215314000-215333800	Weak transcription	NHDF-Ad	bronchial
2	chr1:215320000-215322400	Weak transcription	NHLF	lung
3	chr1:215320000-215333600	Weak transcription	Osteobl	bone
4	chr1:215320000-215333800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215320600-215322200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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