Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11119541	0.85[CEU][hapmap]
rs11584633	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11585911	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11808209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12040304	0.85[CEU][hapmap]
rs1343876	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17016429	0.83[YRI][hapmap]
rs17016432	0.89[YRI][hapmap]
rs17016440	0.90[YRI][hapmap]
rs17016444	0.90[YRI][hapmap]
rs17016448	0.89[YRI][hapmap]
rs17016455	0.90[YRI][hapmap]
rs17016457	0.89[YRI][hapmap]
rs17016460	0.95[YRI][hapmap]
rs17016461	0.89[YRI][hapmap]
rs17016468	0.83[YRI][hapmap]
rs17016475	0.89[YRI][hapmap]
rs17016478	0.90[YRI][hapmap]
rs17016485	0.90[YRI][hapmap]
rs17016492	0.90[YRI][hapmap]
rs17016497	0.90[YRI][hapmap]
rs61828132	0.87[EUR][1000 genomes]
rs6659137	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6685262	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7550703	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv549106	chr1:210698719-210736508	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011702	chr1:210706323-210739030	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1003105	chr1:210717288-210739030	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1014480	chr1:210717288-210743026	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210730000-210742400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210732000-210738200	Weak transcription	HSMMtube	muscle
3	chr1:210733600-210737000	Weak transcription	Fetal Heart	heart

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