Variant report

Variant	rs1213763
Chromosome Location	chr1:58598402-58598403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1213758	0.90[ASN][1000 genomes]
rs1213759	0.86[ASN][1000 genomes]
rs2406590	0.93[CHB][hapmap];0.84[CHD][hapmap];0.90[ASN][1000 genomes]
rs2806397	0.86[ASN][1000 genomes]
rs4912302	0.88[ASN][1000 genomes]
rs515683	0.93[CHB][hapmap];0.84[CHD][hapmap];0.90[ASN][1000 genomes]
rs533114	0.86[ASN][1000 genomes]
rs558475	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs581861	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs591970	1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[ASN][1000 genomes]
rs602547	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs674913	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs674986	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs688010	0.88[ASN][1000 genomes]
rs7529686	0.88[ASN][1000 genomes]
rs7529800	0.88[ASN][1000 genomes]
rs864250	1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1213763	INADL	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58597800-58598600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:58598000-58598600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:58598200-58599600	Enhancers	Fetal Thymus	thymus
4	chr1:58598200-58599600	Enhancers	Thymus	Thymus
5	chr1:58598400-58598600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:58598400-58599000	Enhancers	Brain Angular Gyrus	brain
7	chr1:58598400-58599200	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links