Variant report

Variant	rs12137975
Chromosome Location	chr1:195732739-195732740
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12117945	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12130880	0.82[AFR][1000 genomes]
rs2225518	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195730600-195732800	Weak transcription	Hela-S3	cervix
2	chr1:195732200-195733200	Active TSS	A549	lung
3	chr1:195732200-195733400	Active TSS	K562	blood
4	chr1:195732400-195732800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:195732400-195732800	Active TSS	Brain Hippocampus Middle	brain
6	chr1:195732400-195732800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:195732400-195732800	ZNF genes & repeats	Right Atrium	heart
8	chr1:195732400-195733000	Active TSS	Brain Cingulate Gyrus	brain
9	chr1:195732400-195733000	Flanking Active TSS	Placenta	Placenta
10	chr1:195732400-195733200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:195732400-195733200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:195732400-195733200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr1:195732400-195733200	Active TSS	HepG2	liver
14	chr1:195732600-195732800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:195732600-195733000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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