Variant report
Variant | rs12138497 |
---|---|
Chromosome Location | chr1:215337687-215337688 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10127521 | 0.95[ASN][1000 genomes] |
rs10127656 | 0.83[ASN][1000 genomes] |
rs10746455 | 0.92[ASN][1000 genomes] |
rs10779639 | 0.82[ASN][1000 genomes] |
rs10779640 | 0.83[ASN][1000 genomes] |
rs10779642 | 0.97[ASN][1000 genomes] |
rs10779643 | 0.97[ASN][1000 genomes] |
rs10779644 | 0.85[ASN][1000 genomes] |
rs10779645 | 0.85[ASN][1000 genomes] |
rs10779646 | 0.85[ASN][1000 genomes] |
rs10779647 | 0.85[ASN][1000 genomes] |
rs10779649 | 0.97[ASN][1000 genomes] |
rs10779650 | 0.97[ASN][1000 genomes] |
rs10779651 | 0.97[ASN][1000 genomes] |
rs10779652 | 0.89[ASN][1000 genomes] |
rs10864153 | 0.81[ASN][1000 genomes] |
rs10864154 | 0.83[ASN][1000 genomes] |
rs10864157 | 0.86[ASN][1000 genomes] |
rs11120495 | 0.93[ASN][1000 genomes] |
rs11120496 | 0.83[ASN][1000 genomes] |
rs11120497 | 0.89[ASN][1000 genomes] |
rs11120498 | 0.84[ASN][1000 genomes] |
rs11120499 | 0.82[ASN][1000 genomes] |
rs11120500 | 0.95[ASN][1000 genomes] |
rs11120506 | 0.85[ASN][1000 genomes] |
rs11120508 | 0.85[ASN][1000 genomes] |
rs11120511 | 0.85[ASN][1000 genomes] |
rs11120513 | 0.85[ASN][1000 genomes] |
rs11120516 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11120517 | 0.83[ASN][1000 genomes] |
rs1112101 | 0.93[ASN][1000 genomes] |
rs12031308 | 0.85[ASN][1000 genomes] |
rs12061916 | 0.84[ASN][1000 genomes] |
rs12062098 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12068734 | 0.85[ASN][1000 genomes] |
rs12120091 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs12121761 | 0.82[ASN][1000 genomes] |
rs12135076 | 0.97[ASN][1000 genomes] |
rs12141874 | 0.98[ASN][1000 genomes] |
rs12143339 | 0.85[ASN][1000 genomes] |
rs12410041 | 0.95[ASN][1000 genomes] |
rs12411068 | 0.93[ASN][1000 genomes] |
rs12567520 | 0.97[ASN][1000 genomes] |
rs12742137 | 0.83[ASN][1000 genomes] |
rs1339405 | 0.83[ASN][1000 genomes] |
rs1339406 | 0.83[ASN][1000 genomes] |
rs1361340 | 0.98[ASN][1000 genomes] |
rs1416647 | 0.93[ASN][1000 genomes] |
rs1578137 | 0.93[ASN][1000 genomes] |
rs2363554 | 0.85[ASN][1000 genomes] |
rs2363556 | 0.97[ASN][1000 genomes] |
rs2363557 | 0.97[ASN][1000 genomes] |
rs2363564 | 0.81[ASN][1000 genomes] |
rs2363565 | 0.85[ASN][1000 genomes] |
rs2363566 | 0.98[ASN][1000 genomes] |
rs2363567 | 0.98[ASN][1000 genomes] |
rs2885812 | 0.85[ASN][1000 genomes] |
rs2885813 | 0.97[ASN][1000 genomes] |
rs2885815 | 0.81[ASN][1000 genomes] |
rs3931584 | 0.86[ASN][1000 genomes] |
rs3931585 | 0.86[ASN][1000 genomes] |
rs4269745 | 0.96[ASN][1000 genomes] |
rs4300189 | 0.95[ASN][1000 genomes] |
rs4303048 | 0.97[ASN][1000 genomes] |
rs4394614 | 0.83[ASN][1000 genomes] |
rs4411107 | 0.84[ASN][1000 genomes] |
rs4428856 | 0.84[ASN][1000 genomes] |
rs4440833 | 0.83[ASN][1000 genomes] |
rs4497183 | 0.85[ASN][1000 genomes] |
rs4509552 | 0.85[ASN][1000 genomes] |
rs4509553 | 0.84[ASN][1000 genomes] |
rs4531266 | 0.83[ASN][1000 genomes] |
rs4548407 | 0.84[ASN][1000 genomes] |
rs4573492 | 0.84[ASN][1000 genomes] |
rs4607848 | 0.95[ASN][1000 genomes] |
rs4655276 | 0.85[ASN][1000 genomes] |
rs4655277 | 0.97[ASN][1000 genomes] |
rs4655278 | 0.98[ASN][1000 genomes] |
rs4655391 | 0.85[ASN][1000 genomes] |
rs4655392 | 0.85[ASN][1000 genomes] |
rs4655393 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs4655394 | 0.98[ASN][1000 genomes] |
rs4655395 | 0.98[ASN][1000 genomes] |
rs61818320 | 0.95[ASN][1000 genomes] |
rs61818328 | 0.97[ASN][1000 genomes] |
rs6657313 | 0.98[ASN][1000 genomes] |
rs6662353 | 0.95[ASN][1000 genomes] |
rs6666828 | 0.83[ASN][1000 genomes] |
rs6667764 | 0.81[ASN][1000 genomes] |
rs6672978 | 0.86[ASN][1000 genomes] |
rs6673739 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6675926 | 0.97[ASN][1000 genomes] |
rs6678758 | 0.97[ASN][1000 genomes] |
rs6683041 | 0.84[ASN][1000 genomes] |
rs6684084 | 0.97[ASN][1000 genomes] |
rs6695343 | 0.92[ASN][1000 genomes] |
rs6695967 | 0.97[ASN][1000 genomes] |
rs6696333 | 0.95[ASN][1000 genomes] |
rs72735359 | 0.97[ASN][1000 genomes] |
rs7417100 | 0.85[ASN][1000 genomes] |
rs7513709 | 0.83[ASN][1000 genomes] |
rs7540029 | 0.85[ASN][1000 genomes] |
rs7541543 | 0.83[ASN][1000 genomes] |
rs7547572 | 0.98[ASN][1000 genomes] |
rs7549136 | 0.84[ASN][1000 genomes] |
rs7551415 | 0.82[ASN][1000 genomes] |
rs9793382 | 0.88[ASN][1000 genomes] |
rs9793690 | 0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv873169 | chr1:215264486-215453286 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionmiRNA target site | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:215334400-215338000 | Weak transcription | NHDF-Ad | bronchial |
2 | chr1:215334400-215339400 | Weak transcription | Osteobl | bone |
3 | chr1:215334400-215340000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |