Variant report

Variant	rs12141564
Chromosome Location	chr1:215340034-215340035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10864155	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806269	1.00[ASN][1000 genomes]
rs11809041	1.00[ASN][1000 genomes]
rs12118235	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118508	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118830	1.00[ASN][1000 genomes]
rs12121815	1.00[CEU][hapmap]
rs12121939	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123237	1.00[ASN][1000 genomes]
rs12127285	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132201	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136185	0.84[EUR][1000 genomes]
rs12138417	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs12146057	1.00[ASN][1000 genomes]
rs1339404	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339407	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023977	1.00[ASN][1000 genomes]
rs17024348	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024370	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17604089	1.00[ASN][1000 genomes]
rs17606405	1.00[ASN][1000 genomes]
rs34999070	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433363	1.00[CEU][hapmap]
rs56662669	1.00[ASN][1000 genomes]
rs56720553	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440894	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74140846	1.00[ASN][1000 genomes]
rs74140868	1.00[ASN][1000 genomes]
rs74140948	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74140950	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531398	1.00[ASN][1000 genomes]
rs7543935	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551303	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553910	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755576	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215338400-215342800	Weak transcription	NHDF-Ad	bronchial
2	chr1:215339400-215340800	Enhancers	Osteobl	bone
3	chr1:215339400-215341200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:215339600-215340800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215339800-215340400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:215339800-215340600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:215340000-215341000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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