Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11127742	0.81[EUR][1000 genomes]
rs11711024	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11712243	0.83[EUR][1000 genomes]
rs11715625	0.85[EUR][1000 genomes]
rs13062741	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13073613	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13074632	0.80[EUR][1000 genomes]
rs13075250	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13079104	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13080520	0.83[EUR][1000 genomes]
rs13083476	0.83[EUR][1000 genomes]
rs13091492	0.83[EUR][1000 genomes]
rs13092157	0.92[EUR][1000 genomes]
rs1464790	0.90[EUR][1000 genomes]
rs1464791	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1524557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17019299	0.88[EUR][1000 genomes]
rs1851930	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2873054	0.89[EUR][1000 genomes]
rs6765917	0.89[EUR][1000 genomes]
rs6792696	0.86[EUR][1000 genomes]
rs6804587	0.85[EUR][1000 genomes]
rs7631052	0.90[EUR][1000 genomes]
rs7641973	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9841087	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81909000-81913000	Weak transcription	Fetal Lung	lung
2	chr3:81909600-81912800	Weak transcription	HUVEC	blood vessel
3	chr3:81910400-81913000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:81910400-81915000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:81911000-81913000	Weak transcription	Fetal Heart	heart
6	chr3:81911000-81914200	Enhancers	Dnd41	blood

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