Variant report

Variant	rs12152903
Chromosome Location	chr5:92683734-92683735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10064251	0.84[ASN][1000 genomes]
rs10072317	0.84[ASN][1000 genomes]
rs10463227	0.95[ASN][1000 genomes]
rs11135387	0.93[ASN][1000 genomes]
rs1471289	0.92[ASN][1000 genomes]
rs2343708	0.94[ASN][1000 genomes]
rs4869195	0.93[ASN][1000 genomes]
rs6420123	0.81[ASN][1000 genomes]
rs9314085	0.84[ASN][1000 genomes]
rs984645	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92672600-92684400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:92677000-92685400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:92678800-92684200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:92679000-92684000	Weak transcription	HSMM	muscle
5	chr5:92683600-92684200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:92683600-92684200	Bivalent Enhancer	HepG2	liver
7	chr5:92683600-92684800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:92683600-92684800	Enhancers	Fetal Muscle Trunk	muscle
9	chr5:92683600-92685600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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