Variant report

Variant	rs12184612
Chromosome Location	chr13:67460363-67460364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67455570..67458044-chr13:67459396..67461929,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv523360	chr13:67322714-67520344	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1051576	chr13:67322747-67520255	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv430580	chr13:67352439-67468100	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562136	chr13:67355618-67485147	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1051623	chr13:67377549-67465276	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900406	chr13:67434161-67532205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv900407	chr13:67434161-67603745	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv562138	chr13:67455787-67511430	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67459000-67460800	Enhancers	Brain Substantia Nigra	brain
2	chr13:67459200-67460400	Enhancers	Brain Angular Gyrus	brain
3	chr13:67459200-67460400	Enhancers	Brain Hippocampus Middle	brain
4	chr13:67459200-67460600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:67459600-67461800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:67459800-67460800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:67459800-67461800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:67459800-67463000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:67460000-67460400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:67460000-67460400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:67460000-67460600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:67460000-67460600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:67460000-67460600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:67460000-67460600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:67460000-67461400	Enhancers	Primary B cells from cord blood	blood
16	chr13:67460000-67461800	Enhancers	Fetal Brain Male	brain
17	chr13:67460000-67463200	Enhancers	Primary B cells from peripheral blood	blood
18	chr13:67460200-67460400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:67460200-67460400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:67460200-67460600	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr13:67460200-67460600	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr13:67460200-67460600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr13:67460200-67460600	Enhancers	Fetal Kidney	kidney
24	chr13:67460200-67460800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr13:67460200-67460800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr13:67460200-67461000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:67460200-67461800	Enhancers	Fetal Brain Female	brain

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